Results
[
{
"executables": [
"runner",
"test_template/template_"
],
"domain": "openkim.org",
"publication-year": "2014",
"created_on": "2018-05-08 15:31:13.187898",
"properties": [
"tag:staff@noreply.openkim.org,2014-04-15:property/cohesive-energy-relation-cubic-crystal"
],
"contributor-id": "4d62befd-21c4-42b8-a472-86132e6591f3",
"makeable": true,
"author": "Daniel Karls",
"kimid-version": "002",
"kimcode": "LammpsExample2__TD_887699523131_002",
"short-id": "TD_887699523131_002",
"version": 2,
"pipeline-api-version": "1.0",
"inserted_on": "2018-05-08 22:57:28.184532",
"kimnum": "887699523131",
"shortcode": "TD_887699523131",
"description": "This example Test Driver illustrates the use of LAMMPS in the openkim-pipeline\nto compute an energy-volume curve (more specifically, a cohesive energy-lattice\nconstant curve) for a given cubic lattice (fcc, bcc, sc, diamond) of a single given\nspecies. The curve is computed for lattice constants ranging from a_min to a_max,\nwith most samples being about a_0 (a_min, a_max, and a_0 are specified via stdin.\na_0 is typically approximately equal to the equilibrium lattice constant.). The precise\nscaling of sample points going from a_min to a_0 and from a_0 to a_max is specified\nby two separate parameters passed from stdin. Please see README.txt for further\ndetails.",
"kimid-version-as-integer": 2,
"extended-id": "LammpsExample2__TD_887699523131_002",
"driver": true,
"simulator-name": "LAMMPS",
"path": "td/LammpsExample2__TD_887699523131_002",
"kim-api-version": "1.9.0",
"approved": true,
"kimid-typecode": "td",
"name": "LammpsExample2",
"kimid-prefix": "LammpsExample2",
"type": "td",
"title": "LammpsExample2: energy-volume curve for monoatomic cubic lattice",
"maintainer-id": "4d62befd-21c4-42b8-a472-86132e6591f3",
"kimid-number": "887699523131",
"latest": true
},
{
"domain": "openkim.org",
"publication-year": "2016",
"created_on": "2018-05-08 15:31:13.203897",
"properties": [
"tag:staff@noreply.openkim.org,2015-05-26:property/cohesive-energy-lattice-invariant-shear-path-cubic-crystal"
],
"contributor-id": "e2ada8d8-70b2-4ffc-843e-a69df752ed91",
"makeable": true,
"author": "Jiadi Fan",
"kimid-version": "001",
"kimcode": "LatticeInvariantShearPathCubicCrystalCBKIM__TD_083627594945_001",
"short-id": "TD_083627594945_001",
"version": 1,
"pipeline-api-version": "1.0",
"inserted_on": "2018-05-08 22:58:28.001841",
"kimnum": "083627594945",
"shortcode": "TD_083627594945",
"description": "This test driver is used to test lattice invariance shear in a cubic crystal based on cb-kim code. Initial guess of lattice parameter, shear direction vector, shear plane normal vector, relaxation optional key need to be set as input. The output will be first PK stress, stiffness matrix, cohesive energy, and displacement of shuffle (if relaxation optional key is true)",
"kimid-version-as-integer": 1,
"extended-id": "LatticeInvariantShearPathCubicCrystalCBKIM__TD_083627594945_001",
"driver": true,
"simulator-name": "none",
"path": "td/LatticeInvariantShearPathCubicCrystalCBKIM__TD_083627594945_001",
"kim-api-version": "1.6",
"approved": true,
"kimid-typecode": "td",
"name": "LatticeInvariantShearPathCubicCrystalCBKIM",
"kimid-prefix": "LatticeInvariantShearPathCubicCrystalCBKIM",
"type": "td",
"title": "Cohesive energy versus shear parameter relation for a cubic crystal",
"maintainer-id": "e2ada8d8-70b2-4ffc-843e-a69df752ed91",
"kimid-number": "083627594945",
"latest": true
},
{
"executables": [
"runner",
"test_template/runner"
],
"domain": "openkim.org",
"publication-year": "2018",
"created_on": "2018-05-08 15:31:13.239896",
"properties": [
"tag:staff@noreply.openkim.org,2015-07-28:property/monovacancy-neutral-unrelaxed-formation-potential-energy-crystal-npt",
"tag:staff@noreply.openkim.org,2015-07-28:property/monovacancy-neutral-relaxed-formation-potential-energy-crystal-npt",
"tag:staff@noreply.openkim.org,2015-07-28:property/monovacancy-neutral-relaxation-volume-crystal-npt"
],
"contributor-id": "c429164b-1b03-4ce3-a3a8-2568dd2bc449",
"makeable": true,
"author": "Junhao Li",
"kimid-version": "000",
"kimcode": "VacancyFormationEnergyRelaxationVolume__TD_647413317626_000",
"short-id": "TD_647413317626_000",
"version": 0,
"inserted_on": "2018-05-08 22:58:55.808412",
"kimnum": "647413317626",
"shortcode": "TD_647413317626",
"description": "Computes the monovacancy formation energy and relaxation volume for cubic and hcp monoatomic crystals.",
"kimid-version-as-integer": 0,
"extended-id": "VacancyFormationEnergyRelaxationVolume__TD_647413317626_000",
"driver": true,
"simulator-name": "ase",
"path": "td/VacancyFormationEnergyRelaxationVolume__TD_647413317626_000",
"kim-api-version": "1.9.0",
"approved": true,
"kimid-typecode": "td",
"name": "VacancyFormationEnergyRelaxationVolume",
"kimid-prefix": "VacancyFormationEnergyRelaxationVolume",
"type": "td",
"title": "Monovacancy formation energy and relaxation volume for cubic and hcp monoatomic crystals",
"maintainer-id": "4d62befd-21c4-42b8-a472-86132e6591f3",
"kimid-number": "647413317626",
"latest": true
},
{
"executables": [
"runner",
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],
"source-citations": [
{
"doi": "10.1142/9789812839664_0016",
"recordtype": "inproceedings",
"author": "J{\\'o}nsson, Hannes and Mills, Greg and Jacobsen, Karsten W.",
"booktitle": "Classical and quantum dynamics in condensed phase simulations",
"title": "Nudged elastic band method for finding minimum energy paths of transitions",
"pages": "385--404",
"year": "1998",
"recordkey": "TD_554849987965_000a"
}
],
"publication-year": "2018",
"domain": "openkim.org",
"created_on": "2018-05-08 15:31:13.239896",
"properties": [
"tag:staff@noreply.openkim.org,2015-09-16:property/monovacancy-neutral-migration-energy-crystal-npt",
"tag:staff@noreply.openkim.org,2015-07-28:property/monovacancy-neutral-relaxed-formation-potential-energy-crystal-npt"
],
"contributor-id": "c429164b-1b03-4ce3-a3a8-2568dd2bc449",
"makeable": true,
"author": "Junhao Li",
"kimid-version": "000",
"kimcode": "VacancyFormationMigration__TD_554849987965_000",
"short-id": "TD_554849987965_000",
"version": 0,
"inserted_on": "2018-05-08 22:58:57.560799",
"kimnum": "554849987965",
"shortcode": "TD_554849987965",
"description": "Computes the monovacancy formation and migration energies for cubic and hcp monoatomic crystals.",
"kimid-version-as-integer": 0,
"extended-id": "VacancyFormationMigration__TD_554849987965_000",
"driver": true,
"simulator-name": "ase",
"path": "td/VacancyFormationMigration__TD_554849987965_000",
"kim-api-version": "1.9.0",
"approved": true,
"kimid-typecode": "td",
"name": "VacancyFormationMigration",
"kimid-prefix": "VacancyFormationMigration",
"type": "td",
"title": "Vacancy formation and migration energies for cubic and hcp monoatomic crystals",
"maintainer-id": "4d62befd-21c4-42b8-a472-86132e6591f3",
"kimid-number": "554849987965",
"latest": true
},
{
"executables": [
"runner"
],
"domain": "openkim.org",
"publication-year": "2018",
"created_on": "2018-05-08 15:31:13.223897",
"properties": [
"tag:staff@noreply.openkim.org,2014-04-15:property/bulk-modulus-isothermal-cubic-crystal-npt",
"tag:staff@noreply.openkim.org,2014-05-21:property/elastic-constants-isothermal-cubic-crystal-npt",
"tag:staff@noreply.openkim.org,2014-04-15:property/structure-cubic-crystal-npt"
],
"contributor-id": "e2ada8d8-70b2-4ffc-843e-a69df752ed91",
"makeable": true,
"author": "Jiadi Fan",
"kimid-version": "000",
"kimcode": "binary_alloy_elastic_constant__TD_601231739727_000",
"short-id": "TD_601231739727_000",
"version": 0,
"inserted_on": "2018-05-08 22:58:59.403416",
"kimnum": "601231739727",
"shortcode": "TD_601231739727",
"description": "Computes the elastic constant for binary alloy system.",
"kimid-version-as-integer": 0,
"extended-id": "binary_alloy_elastic_constant__TD_601231739727_000",
"driver": true,
"path": "td/binary_alloy_elastic_constant__TD_601231739727_000",
"kim-api-version": "1.9.0",
"approved": true,
"kimid-typecode": "td",
"name": "binary_alloy_elastic_constant",
"kimid-prefix": "binary_alloy_elastic_constant",
"type": "td",
"title": "Elastic constants of cubic binary alloys",
"maintainer-id": "e2ada8d8-70b2-4ffc-843e-a69df752ed91",
"kimid-number": "601231739727",
"latest": true
},
{
"executables": [
"runner"
],
"domain": "openkim.org",
"publication-year": "2018",
"created_on": "2018-07-12 22:49:25.400736",
"properties": [
"tag:staff@noreply.openkim.org,2014-04-15:property/cohesive-potential-energy-cubic-crystal"
],
"contributor-id": "4d62befd-21c4-42b8-a472-86132e6591f3",
"makeable": true,
"author": "Daniel Karls",
"kimid-version": "004",
"kimcode": "LammpsExample__TD_567444853524_004",
"short-id": "TD_567444853524_004",
"version": 4,
"inserted_on": "2018-07-13 03:49:25.671370",
"kimnum": "567444853524",
"shortcode": "TD_567444853524",
"description": "This example Test Driver illustrates the use of LAMMPS to compute the equilibrium lattice spacing and cohesive energy of fcc argon using Polak-Ribiere conjugate gradient minimization in LAMMPS and an initial guess at the equilibrium lattice spacing supplied by the user through pipeline.stdin.tpl.",
"kimid-version-as-integer": 4,
"extended-id": "LammpsExample__TD_567444853524_004",
"driver": true,
"simulator-name": "LAMMPS",
"path": "td/LammpsExample__TD_567444853524_004",
"kim-api-version": "1.9.0",
"approved": true,
"kimid-typecode": "td",
"name": "LammpsExample",
"kimid-prefix": "LammpsExample",
"type": "td",
"title": "LammpsExample: cohesive energy and equilibrium lattice constant of fcc argon",
"maintainer-id": "4d62befd-21c4-42b8-a472-86132e6591f3",
"kimid-number": "567444853524",
"latest": true
},
{
"extended-id": "LatticeConstantCubicEnergy__TD_475411767977_007",
"short-id": "TD_475411767977_007",
"kimid-prefix": "LatticeConstantCubicEnergy",
"kimid-typecode": "td",
"kimid-number": "475411767977",
"kimid-version": "007",
"kimid-version-as-integer": 7,
"name": "LatticeConstantCubicEnergy",
"type": "td",
"kimnum": "475411767977",
"version": 7,
"shortcode": "TD_475411767977",
"kimcode": "LatticeConstantCubicEnergy__TD_475411767977_007",
"path": "td/LatticeConstantCubicEnergy__TD_475411767977_007",
"approved": true,
"inserted_on": "2019-07-10 20:23:29.773758",
"latest": true,
"makeable": true,
"driver": true,
"author": "Daniel S. Karls and Junhao Li",
"contributor-id": "4d62befd-21c4-42b8-a472-86132e6591f3",
"description": "Equilibrium lattice constant and cohesive energy of a cubic lattice at zero temperature and pressure.",
"doi": "10.25950/2765e3bf",
"domain": "openkim.org",
"executables": [
"runner",
"test_template/runner"
],
"kim-api-version": "2.0",
"maintainer-id": "4d62befd-21c4-42b8-a472-86132e6591f3",
"properties": [
"tag:staff@noreply.openkim.org,2014-04-15:property/cohesive-potential-energy-cubic-crystal",
"tag:staff@noreply.openkim.org,2014-04-15:property/structure-cubic-crystal-npt"
],
"publication-year": "2019",
"simulator-name": "ase",
"title": "Equilibrium lattice constant and cohesive energy of a cubic lattice at zero temperature and pressure v007",
"created_on": "2019-07-10 15:23:29.384734"
},
{
"extended-id": "ElasticConstantsCubic__TD_011862047401_006",
"short-id": "TD_011862047401_006",
"kimid-prefix": "ElasticConstantsCubic",
"kimid-typecode": "td",
"kimid-number": "011862047401",
"kimid-version": "006",
"kimid-version-as-integer": 6,
"name": "ElasticConstantsCubic",
"type": "td",
"kimnum": "011862047401",
"version": 6,
"shortcode": "TD_011862047401",
"kimcode": "ElasticConstantsCubic__TD_011862047401_006",
"path": "td/ElasticConstantsCubic__TD_011862047401_006",
"approved": true,
"inserted_on": "2019-07-11 20:50:03.335764",
"latest": true,
"makeable": true,
"driver": true,
"author": "Junhao Li and Ellad Tadmor",
"contributor-id": "360c0aed-48ce-45f6-ba13-337f12a531e8",
"description": "Computes the cubic elastic constants for some common crystal types (fcc, bcc, sc, diamond) by calculating the hessian of the energy density with respect to strain. An estimate of the error associated with the numerical differentiation performed is reported.",
"doi": "10.25950/5853fb8f",
"domain": "openkim.org",
"executables": [
"runner",
"test_template/runner"
],
"kim-api-version": "2.0",
"maintainer-id": "360c0aed-48ce-45f6-ba13-337f12a531e8",
"properties": [
"tag:staff@noreply.openkim.org,2014-04-15:property/bulk-modulus-isothermal-cubic-crystal-npt",
"tag:staff@noreply.openkim.org,2014-05-21:property/elastic-constants-isothermal-cubic-crystal-npt"
],
"publication-year": "2019",
"simulator-name": "ase",
"source-citations": [
{
"address": "New York",
"author": "H.B. Huntington",
"doi": "10.1016/S0081-1947(08)60553-6",
"journal": "Solid State Physics",
"pages": "213--351",
"publisher": "Academic Press",
"recordkey": "TD_011862047401_006a",
"recordtype": "article",
"title": "The Elastic Constants of Crystals",
"volume": "7",
"year": "1958"
}
],
"title": "Elastic constants for cubic crystals at zero temperature and pressure v006",
"created_on": "2019-07-11 15:50:02.944366"
},
{
"extended-id": "CohesiveEnergyVsLatticeConstant__TD_554653289799_003",
"short-id": "TD_554653289799_003",
"kimid-prefix": "CohesiveEnergyVsLatticeConstant",
"kimid-typecode": "td",
"kimid-number": "554653289799",
"kimid-version": "003",
"kimid-version-as-integer": 3,
"name": "CohesiveEnergyVsLatticeConstant",
"type": "td",
"kimnum": "554653289799",
"version": 3,
"shortcode": "TD_554653289799",
"kimcode": "CohesiveEnergyVsLatticeConstant__TD_554653289799_003",
"path": "td/CohesiveEnergyVsLatticeConstant__TD_554653289799_003",
"approved": true,
"inserted_on": "2019-07-12 02:18:36.315233",
"latest": true,
"makeable": true,
"driver": true,
"author": "Daniel S. Karls",
"contributor-id": "4d62befd-21c4-42b8-a472-86132e6591f3",
"description": "This Test Driver uses LAMMPS to compute the cohesive energy of a given monoatomic cubic lattice (fcc, bcc, sc, or diamond) at a variety of lattice spacings. The lattice spacings range from a_min (=a_min_frac*a_0) to a_max (=a_max_frac*a_0) where a_0, a_min_frac, and a_max_frac are read from stdin (a_0 is typically approximately equal to the equilibrium lattice constant). The precise scaling and number of lattice spacings sampled between a_min and a_0 (a_0 and a_max) is specified by two additional parameters passed from stdin: N_lower and samplespacing_lower (N_upper and samplespacing_upper). Please see README.txt for further details.",
"doi": "10.25950/64cb38c5",
"domain": "openkim.org",
"executables": [
"runner",
"test_template/template_"
],
"kim-api-version": "2.0",
"maintainer-id": "4d62befd-21c4-42b8-a472-86132e6591f3",
"properties": [
"tag:staff@noreply.openkim.org,2014-04-15:property/cohesive-energy-relation-cubic-crystal"
],
"publication-year": "2019",
"simulator-name": "LAMMPS",
"title": "Cohesive energy versus lattice constant curve for monoatomic cubic lattices v003",
"created_on": "2019-07-11 21:18:34.667473"
},
{
"extended-id": "PhononDispersionCurve__TD_530195868545_004",
"short-id": "TD_530195868545_004",
"kimid-prefix": "PhononDispersionCurve",
"kimid-typecode": "td",
"kimid-number": "530195868545",
"kimid-version": "004",
"kimid-version-as-integer": 4,
"name": "PhononDispersionCurve",
"type": "td",
"kimnum": "530195868545",
"version": 4,
"shortcode": "TD_530195868545",
"kimcode": "PhononDispersionCurve__TD_530195868545_004",
"path": "td/PhononDispersionCurve__TD_530195868545_004",
"approved": true,
"inserted_on": "2019-07-12 06:51:21.433810",
"latest": true,
"makeable": true,
"driver": true,
"author": "Matt Bierbaum",
"contributor-id": "8f8225b4-8b9c-439d-879d-45ee35db5757",
"description": "Calculates the phonon dispersion relations for fcc lattices and records the results as curves.",
"doi": "10.25950/64f4999b",
"domain": "openkim.org",
"executables": [
"runner",
"test_template/runner"
],
"kim-api-version": "2.0",
"maintainer-id": "8f8225b4-8b9c-439d-879d-45ee35db5757",
"properties": [
"tag:staff@noreply.openkim.org,2014-05-21:property/phonon-dispersion-dos-cubic-crystal-npt",
"tag:staff@noreply.openkim.org,2014-05-21:property/phonon-dispersion-relation-cubic-crystal-npt"
],
"publication-year": "2019",
"simulator-name": "ase",
"title": "Phonon dispersion relations for an fcc lattice v004",
"created_on": "2019-07-12 01:51:21.037358"
},
{
"extended-id": "SurfaceEnergyCubicCrystalBrokenBondFit__TD_955413365818_004",
"short-id": "TD_955413365818_004",
"kimid-prefix": "SurfaceEnergyCubicCrystalBrokenBondFit",
"kimid-typecode": "td",
"kimid-number": "955413365818",
"kimid-version": "004",
"kimid-version-as-integer": 4,
"name": "SurfaceEnergyCubicCrystalBrokenBondFit",
"type": "td",
"kimnum": "955413365818",
"version": 4,
"shortcode": "TD_955413365818",
"kimcode": "SurfaceEnergyCubicCrystalBrokenBondFit__TD_955413365818_004",
"path": "td/SurfaceEnergyCubicCrystalBrokenBondFit__TD_955413365818_004",
"approved": true,
"inserted_on": "2019-07-12 16:37:22.287242",
"latest": true,
"makeable": true,
"driver": true,
"author": "Matt Bierbaum",
"contributor-id": "8f8225b4-8b9c-439d-879d-45ee35db5757",
"description": "Calculates the surface energy of several high symmetry surfaces and produces a broken-bond model fit. In latex form, the fit equations are given by:\n\nE_{FCC} (\\vec{n}) = p_1 (4 \\left( |x+y| + |x-y| + |x+z| + |x-z| + |z+y| +|z-y|\\right)) + p_2 (8 \\left( |x| + |y| + |z|\\right)) + p_3 (2 ( |x+ 2y + z| + |x+2y-z| + |x-2y + z| + |x-2y-z| + |2x+y+z| + |2x+y-z| +|2x-y+z| +|2x-y-z| +|x+y+2z| +|x+y-2z| +|x-y+2z| +|x-y-2z| ) + c\n\nE_{BCC} (\\vec{n}) = p_1 (6 \\left( | x+y+z| + |x+y-z| + |-x+y-z| + |x-y+z| \\right)) + p_2 (8 \\left( |x| + |y| + |z|\\right)) + p_3 (4 \\left( |x+y| + |x-y| + |x+z| + |x-z| + |z+y| +|z-y|\\right)) +c.\n\nIn Python, these two fits take the following form:\n\ndef BrokenBondFCC(params, index):\n\n import numpy\n x, y, z = index\n x = x / numpy.sqrt(x**2.+y**2.+z**2.)\n y = y / numpy.sqrt(x**2.+y**2.+z**2.)\n z = z / numpy.sqrt(x**2.+y**2.+z**2.)\n\n return params[0]*4* (abs(x+y) + abs(x-y) + abs(x+z) + abs(x-z) + abs(z+y) + abs(z-y)) + params[1]*8*(abs(x) + abs(y) + abs(z)) + params[2]*(abs(x+2*y+z) + abs(x+2*y-z) +abs(x-2*y+z) +abs(x-2*y-z) + abs(2*x+y+z) +abs(2*x+y-z) +abs(2*x-y+z) +abs(2*x-y-z) + abs(x+y+2*z) +abs(x+y-2*z) +abs(x-y+2*z) +abs(x-y-2*z))+params[3]\n\ndef BrokenBondBCC(params, x, y, z):\n\n\n import numpy\n x, y, z = index\n x = x / numpy.sqrt(x**2.+y**2.+z**2.)\n y = y / numpy.sqrt(x**2.+y**2.+z**2.)\n z = z / numpy.sqrt(x**2.+y**2.+z**2.)\n\n return params[0]*6*(abs(x+y+z) + abs(x-y-z) + abs(x-y+z) + abs(x+y-z)) + params[1]*8*(abs(x) + abs(y) + abs(z)) + params[2]*4* (abs(x+y) + abs(x-y) + abs(x+z) + abs(x-z) + abs(z+y) + abs(z-y)) + params[3]",
"doi": "10.25950/6c43a4e6",
"domain": "openkim.org",
"executables": [
"runner",
"test_template/runner"
],
"kim-api-version": "2.0",
"maintainer-id": "8f8225b4-8b9c-439d-879d-45ee35db5757",
"properties": [
"tag:staff@noreply.openkim.org,2014-05-21:property/surface-energy-broken-bond-fit-cubic-bravais-crystal-npt",
"tag:staff@noreply.openkim.org,2014-05-21:property/surface-energy-cubic-crystal-npt",
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